| RSV | ISSCapoA1 | ISSCapoA2 | ISSCapoA3 | ISSCapoA4 | ISSCapoA5 | ISSCapoA6 | ISSCapoA7 | ISSCapoA8 | ISSCapoA9 | ISSCapoC1 | ISSCapoC2 | ISSCapoC3 | ISSCapoC4 | ISSCapoC5 | ISSCapoC6 | ISSCapoC7 | ISSCapoB1 | ISSCapoB2 | ISSCapoB3 | ISSCapoB4 | ISSCapoB5 | ISSCapoB6 | ISSCapoB7 | ISSCapoB8 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RSV_0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10 | 0 | 0 | 160 | 0 | 0 | 0 | 0 | 0 | 31 | 1080 | 0 | 0 | 0 |
| RSV_0002 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 9 | 0 | 0 |
| RSV_0003 | 0 | 0 | 0 | 74 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Taxonomic classification |
|---|
| k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;gFaecalibacterium;s |
| k__Bacteria;p__Cyanobacteria;c__Melaibacteria;oGastraerophilales;f;g;s |
| k__Bacteria;p__Planctomycetes;c__Phycisphaerae;oWD2101_soil_group;f;g;s |
| domain | phylum | className | order | family | genus |
|---|---|---|---|---|---|
| Viruses | unclassified (derived from Viruses) | unclassified (derived from Viruses) | Caudovirales | Podoviridae | AHJD-like viruses |
| Bacteria | Firmicutes | Bacilli | Lactobacillales | Aerococcaceae | Abiotrophia |
| COLA1 | COLB1 | N2A | N2B | N3C1 | N1C |
|---|---|---|---|---|---|
| 11 | 130 | 2 | 25 | 32 | 33 |
| 17 | 898 | 10 | 98 | 102 | 119 |
| 0 | 1 | 0 | 0 | 0 | 0 |
| Sampled_surface | ISS_module | Wipe | Session |
|---|---|---|---|
| Ambient air (field blank, FB) | Columbus | A5 | A |
| Ambient air (field blank, FB) | Columbus | A5 | B |
| Ambient air (field blank, FB) | Columbus | B1 | A |
| Ambient air (field blank, FB) | Columbus | B1 | B |
| Light covers | Columbus | A4 | A |
| Light covers | Columbus | A4 | B |
| Light covers | Columbus | B2 | A |
| Light covers | Columbus | B2 | B |
| SCC laptop | Columbus | A2 | A |
| SCC laptop | Columbus | A2 | B |
sqrt(TSS) makes no sensearrange(desc(count)) %>% top_n(200)| domain | n |
|---|---|
| Archaea | 59 |
| Bacteria | 592 |
| Eukaryota | 390 |
| other sequences | 1 |
| Viruses | 73 |
This study reveals a problem with data reproducibility
We discovered that there are many ways to accomplish the same task
Further perspectives & improvements
purrr() and SD1 column-renaming by referencing Table 1